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Book Combinatorial Scientific Computing, Uwe Naumann, Olaf Schenk (Editor), Publisher: Chapman and Hall/CRC (Dec 15 2011) ISBN-10: 1439827354, ISBN-13: 978-1439827352
Combinatorial Scientific Computing Book
Preprints
[71] P. Arbenz, Y. Saad, A. Sameh, O. Schenk: "Guest editorial: Special issue on Parallel Matrix Algorithms and Applications (PMAA'10)". Parallel Computing 37 (12): 731-732 (2011), doi:10.1016/j.parco.2011.10.011.
[70] M. Rietmann, O. Schenk, H. Burkhart, Scaling Results for a Discontinuous Galerkin Finite-Element Wave Solver on Multi-GPU Systems, PARS - Workshop on Parallel Systems and Algorithms PARS 2011, May 26-27, 2011, IBM Research Rüschlikon, Switzerland
[69] M. Grote, J. Huber, and O. Schenk, Inexact interior-point methods for time-harmonic inverse medium problems, 10th International Conference on Mathematical and Numerical Aspects of Waves (Waves 2011), Simon Fraser University Harbor Center, Vancouver, Canada. July 2011.
[68] M. Christen, O. Schenk, H. Burkhart, PATUS: A Code Generation and Auto-Tuning Framework For Parallel Stencil Computations, Cetus Users and Compiler Infastructure Workshop in conjunction with PACT 2011 Galveston Island, Texas, USA, October 10, 2011
[67] H. Burkhart, M. Christen, M. Rietmann, M. Sathe, O. Schenk, Run, Stencil, Run! - A Comparison of Modern Parallel Programming Paradigms, PARS - Workshop on Parallel Systems and Algorithms PARS 2011, May 26-27, 2011, IBM Research Rüschlikon, Switzerland
[66] F. Curtis, J. Huber, O. Schenk, and A. Waechter, On the Implementation of an Interior-Point Algorithm for Nonlinear Optimization with Inexact Step Computations. IBM Technical Report RC25143, submitted.
[65] M. Christen, O. Schenk, and H. Burkhart, Automatic Code Generation and Tuning for Stencil Kernels on Modern Microarchitecture, Journal Computer Science Research and Development, Proceedings of the International Supercomputing Conference ISC11. Volume 26, pp. 205-210, 2011, DOI 10.1007/s00450-011-0160-6
[64] M. Grote, J. Huber, and O. Schenk, Towards Interior Point Methods for the Inverse Medium Problem on Massively Parallel Architectures Procedia Computer Science Volume 4, 2011, pp. 1466-1474, Proceedings of the International Conference on Computational Science, ICCS 2011.
[63] [book webpage] J. Huber, U. Naumann, O. Schenk, E. Varnik, and A. Waechter, Algorithmic Differentiation and Nonlinear Optimization for an Inverse Medium Problem, Book Chapter in Combinatorial Scientific Computing, Edited by U. Naumann and O. Schenk, Chapman-Hall CRC Computational Science, pp. 203-231, ISBN 9781439827352, January 2012.
[62] [book webpage] M. Sathe, O. Schenk, B. Ucar, and A. Sameh, Towards A Scalable Hybrid Linear Solver Based On Combinatorial Algorithms. Book Chapter in Combinatorial Scientific Computing, Edited by U. Naumann and O. Schenk, Chapman-Hall CRC Computational Science, pp. 96-127, ISBN 9781439827352, January 2012.
[61] M. Christen, O. Schenk, and H. Burkhart, Patus: A Code Generation and Autotuning Framework For Parallel Iterative Stencil Computations on Modern Microarchitectures, 25th IEEE International Parallel Distributed Processing Symposium, May 16-20, 2011. Anchorage (Alaska) USA, in press.
[60] O. Schenk and K. Gärtner, PARDISO, Invited Book Chapter in Springer Encyclopedia of Parallel Computing, David Padua (Ed.), Springer, to appear.
2010
Refeered Journal Articles
[59] F. Curtis, O. Schenk, and W. Waechter, An Interior-Point Algorithm for Large-Scale Nonlinear Optimization with Inexact Step Computations. SIAM J. Sci. Comput. Volume 32, Issue 6, pp. 3447-3475 (2010)
Refeered Book Chapter
[58] [book webpage] M. Christen, O. Schenk, and H. Burkhart, Manycore Stencil Computations in Hyperthermia Applications. Book Chapter in Scientific Computing with Multicore and Accelerators, Edited by D. Bader and J. Dongarra, Chapman-Hall CRC Computational Science, pp. 255-277, ISBN: 978-1-4398253-6-5,
2009
Refeered Journal Articles
[57] M. Bollhoefer, M. J. Grote, and O. Schenk, Algebraic Multilevel Preconditioner For the Helmholtz Equation In Heterogeneous Media. SIAM J. Sci. Comput., Volume 31, Issue 5, pp. 3781-3805 (2009), DOI: 10.1137/080725702
Refeered Conference Proceedings
[56] Uwe Naumann and Olaf Schenk and Horst D Simon and Sivan Toledo, 09061 Abstracts Collection -- Combinatorial Scientific Computing, 09061, Dagstuhl Seminar Proceedings, ISSN 1862-4405, 2009, Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, Germany.
[55] M. Sathe, O. Schenk, M. Christen, and H. Burkhart, A Parallel PDE-Constrained Optimization Framework for Biomedical Hyperthermia Treatment Planning, PARS-Mitteilungen (ISSN 0177-0454). Accepted, in press.
[54] E. Neufeld, M. Christen, O. Schenk, A. Waechter and N. Kuster, Nonlinear, Temperature Based Optimization for Hyperthermia Treatment Planning Using PDE Constrained Interior Point Optimization, Proc. of 25th Annual Meeting of the European Society for Hyperthermic Oncology, Verona, Italy, June 2009. Accepted, in press.
[53] M. Manguoglu, A. Sameh, and O. Schenk, PSPIKE Parallel Sparse Linear System Solver, Proceedings of the 15th International Euro-Par Conference on Parallel Processing, Lecture Notes in Computer Science, Volume 5704/2009, 797-808, DOI 10.1007/978-3-642-03869-3.
[52] O. Schenk, M. Manguoglu, A. Sameh, M. Christen, M. Sathe, Parallel Scalable PDE-Constrained Optimization: Antenna Identification in Hyperthermia Cancer Treatment Planning. Journal Computer Science Research and Development, Proceedings of the International Supercomputing Conference ISC09. Volume 23, Numbers 3-4, pp. 177-183, 2009, DOI: 10.1007/s00450-009-0080.
[51] M. Christen, O. Schenk, P. Messmer, E. Neufeld, and H. Burkhart, Parallel Data-Locality Aware Stencil Computations on Modern Micro-Architectures, 23rd IEEE International Parallel and Distributed Processing Symposium, May 25-29, 2009 Rome, Italy
[50] M. Sathe, O. Schenk, and H. Burkhart, Solving Bi-Objective Many-Constraint Bin Packing Problems in Automobile Sheet Metal Forming Processes, Proceedings of the 5th International Conference on Evolutionary Multi-Criterion Optimization, Nantes, France, April 2009, Lecture Notes in Computer Science, Springer, 5467, pp. 246-261, 2009.
Abstracts/Posters
[49] Matthias Christen, Esra Neufeld, Olaf Schenk, and Andreas Waechter, Large-Scale PDE-Constrained Optimization in Biomedical Hyperthermia Treatment Planning, Dagstuhl Seminar on Combinatorial Scientific Computing, International Conference and Research Center for Computer Science 01.02.09-06.02.09, Dagstuhl, Germany
[48] Matthias Christen, and Olaf Schenk, Scalable Stencil Computations on Modern Chip-Multithreading Architectures Dagstuhl Seminar on Combinatorial Scientific Computing, International Conference and Research Center for Computer Science 01.02.09-06.02.09, Dagstuhl, Germany
2008
Refeered Journal Articles
[47] O. Schenk, A. Wächter, and M. Weiser, Inertia Revealing Preconditioning For Large-Scale Nonconvex Constrained Optimization, SIAM J. Sci. Comput. Volume 31, Issue 2, pp. 939-960 (2008)
[46] O. Schenk, M. Christen, and H. Burkhart, Algorithmic Performance Studies on Graphics Processing Units, J. Parallel Distrib. Comput. 68 (2008) 1360-1369.
[45] O. Schenk, M. Bollhöfer, and R. Römer, On large-scale diagonalization techniques for the Anderson model of localization. Featured SIGEST paper in the SIAM Review selected "on the basis of its exceptional interest to the entire SIAM community". SIAM Review 50 (2008), pp. 91-112.
Refeered Conference Proceedings
[44] M. Christen, O. Schenk, P. Messmer, E. Neufeld, and H. Burkhart, Accelerating Stencil-Based Computations by Increased Temporal Locality on Modern Multi- and Many-Core Architectures. Proceedings of the First International Workshop on New Frontiers in High-performance and Hardware-aware Computing (HipHaC'08). IEEE/ACM International Symposium on Microarchitecture (MICRO-41), pp. 47-54, ISBN 978-3-86644-298-6, November 8, 2008, Lake Como, Italy.
Abstracts/Posters
[43] M. Christen, O. Schenk, and H. Burkhart, Large-Scale PDE-constrained Optimization in Hyperthermia Cancer Treatment Planning, Poster, Colloque Numerique Suisse / Schweizer Numerik Kolloquium, Book of Abstract, pp. 14, Friday, April 25, 2008, University of Fribourg, Switzerland.
[42] M. Sathe, O. Schenk, and H. Burkhart, Mixed integer optimization in automobile sheet metal forming processes, Poster, Colloque Numerique Suisse / Schweizer Numerik Kolloquium, Book of Abstract, pp. 28, Friday, April 25, 2008, University of Fribourg, Switzerland.
[41] M. Christen, O. Schenk, and H. Burkhart, Large-Scale PDE-constrained Optimization in Hyperthermia Cancer Treatment Planning, Poster, SIAM Conference on Parallel Processing for Scientific Computung, March 12-14, 2008, Atlanta, US
2007
Refeered Journal Articles
[40] O. Schenk, A. Wächter, and M. Hagemann, Matching-based Preprocessing Algorithms to the Solution of Saddle-Point Problems in Large-Scale Nonconvex Interior-Point Optimization. Journal of Computational Optimization and Applications, pp. 321-341, Volume 36, Numbers 2-3 / April, 2007.
Refeered Conference Proceedings
[39] M. Christen, O. Schenk, and H. Burkhart, Graphics Processing Units as Fast Co-Processors for Hardware-oriented Numerics, In Proc. of the 21th PARS Workshop, PARS Mitteilungen, Informationstechnische Gesellschaft im VDE, Dec 2007, ISBN 0177-0454, pp. 185-194.
[38] M. Christen, O. Schenk, and H. Burkhart, General-Purpose Sparse Matrix Building Blocks using the NVIDIA CUDA Technology Platform, Book of Abstracts, First Workshop on General Purpose Processing on Graphics Processing Units, Boston, Oct 04, 2007.
[37] O. Schenk, M. Bollh�fer, and R. R�mer, On Large-Scale Diagonalization Techniques for the Anderson Model of Localization, In Proc. of the 6th International Congress on Industrial and Applied Mathematics, ETH Zurich, Switzerland, July 25-29, 2007.
Abstracts/Posters
[36] M. Christen, O. Schenk, and H. Burkhart, Modelling, Simulation, and Optimization in Hyperthermia Cancer Treatment Planning, Poster, Biovalley Science Day, Basel, Oct 25, 2007.
[35] M. Christen, O. Schenk, H. Burkhart, Graphical Processing Units as Co-Processors for Hardware-oriented Numerical Solvers, Book of Abstracts, 21. PARS - Workshop PARS '07, Hamburg, May 31 - June 02, 2007.
2006
Refeered Journal Articles
[34] O. Schenk and K. Gärtner, On Fast Factorization Pivoting Methods for Sparse Symmetric Indefinite Systems. Electronic Transactions on Numerical Analysis, 23(2006), pp. 158-179.
[33] M. Bollhöfer and O. Schenk, Combinatorial Aspects in Sparse Direct Solvers, GAMM Mitteilungen, 29 (2006), pp. 342-367.
[32] O. Schenk, M. Bollhöfer, and R. Römer, On large-scale diagonalization techniques for the Anderson model of localization. SIAM J. Sci. Comput., 28 (2006), pp. 963-983.
[31] M. Hagemann and O. Schenk, Weighted Matchings for Preconditioning Symmetric Indefinite Linear Systems. SIAM J. Sci. Comput., 28 (2006), pp. 403-420.
Refeered Conference Proceedings
[30] M. Bollh�fer, M. Grote, and O. Schenk, Algebraic multilevel preconditioning for Helmholtz equation, In Proc. of Europ. Conf. on Comput. Fluid Dynamics (ECCOMAS CFD 2006), held in Egmond aan Zee, The Netherlands, Sept. 5-8, 2006.
[29] S. R�llin and O. Schenk, Maximum-Weighted Matching Strategies and the Application to Symmetric Indefinite Systems, in J. Dongarra, K. Madsen, J. Wasniewski (Eds.): Applied Parallel Computing, State of the Art in Scientific Computing, 7th International Workshop, PARA 2004, Lyngby, Denmark, June 20-23, 2004, Revised Selected Papers. Springer 2006, ISBN 3-540-29067-2, Lecture Notes in Computer Science, Springer, 3732 (2006), pp. 808-817.
Abstracts/Posters
[28] O. Schenk, A. W�chter, and M. Hagemann, Combinatorial Approaches to the Solution of Saddle-Point Problems in Large-Scale Interior-Point Optimization, Book of Abstracts, pp. 171, SIAM Conference on Applied Linear Algebra, held at University of D�sseldorf, Germany, July 24 - 27, 2006.
[27] M. Bollh�fer, M. Grote, and O. Schenk, Algebraic multigrid for symmetric indefinite systems, Book of Abstracts, pp. 17, SIAM Conference on Applied Linear Algebra, held at University of D�sseldorf, Germany, July 24 - 27, 2006
[26] O. Schenk, A. W�chter, and M. Hagemann, Solution of KKT systems in Large-Scale Interior-Point Optimization, Book of Abstracts, pp.29, Swiss Numerical Analysis Days, held at the EPFL, Lausanne, April 12, 2006.
[25] O. Schenk, M. Bollh�fer, and R. R�mer, On large scale diagonalization techniques for the Anderson model of localization, Book of Abstracts, Ninth Copper Mountain Conference on Iterative Methods, Copper Mountain, USA, April 2-7, 2006.
[24] M. Bollh�fer, M. Grote, and O. Schenk, Algebraic multigrid for indefinite systems, GAMM Annual Meeting, Book of Abstracts, pp. 441, held at Technische Universit�t Berlin, March 27-31, 2006.
2005
Refeered Books/Book Chapters
[23] O. Schenk, and H. van der Vorst, Solution of Linear Systems, Handbook of Numerical Analysis, Volume XIII: Numerical Methods in Electromagnetics, Elsevier Science, ISBN 0-444-513752, pp. 755-824, 2005.
[22] P. Arbenz, H. Burkhart, O. Schenk, and E. M�hle, SPEEDUP/PARS workshop on modern algorithms in computational sciences and information technology, Future Generation Computer Systems, 21 (8), pp. 1249-1250 (2005).
Refeered Conference Proceedings
[21] P. Banushkina, O. Schenk, and M. Meuwly, Efficiency considerations in solving Smoluchowski equations for rough potentials, in M. R. Berthold, R. C. Glen, K. Diederichs, O. Kohlbacher, I. Fischer (Eds.): Computational Life Sciences, First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings. Springer 2005, ISBN 3-540-29104-0, Lecture Notes in Computer Science, 3695 (2005), pp. 208-216.
Abstracts/Posters
[20] M. Hagemann and O. Schenk, Symmetric Matchings Strategies for the Preconditioning of Saddle Point Problems, Book of Abstracts, Preconditioning '05, held at Emory University, Atlanta, May 19-21, 2005.
2004
Refeered Journal Articles
[20] O. Schenk, M. Hillmann, Optimal design of metal forming die surfaces with evolution strategies, Computer&Structures, 82 (2004), pp. 1695-1705.
[19] O. Schenk, S. Röllin, and A. Gupta, The Effects of Unsymmetric Matrix Permutations and Scalings in Semiconductor Device and Circuit Simulation, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, 23 (2004), pp. 400-411.
[18] O. Schenk and K. Gärtner, Solving Unsymmetric Sparse Systems of Linear Equations with PARDISO, Journal of Future Generation Computer Systems, 20 (2004), pp. 475-487.
Refeered Conference Proceedings
[17] Karl Fuerlinger, Olaf Schenk, and Michael Hagemann. Task-Queue Based Hybrid Parallelism: A Case Study. In Proceedings of the 10th International Euro-Par Conference on Parallel Processing (Euro-Par '04), pages 624-632, 2004.
Abstracts/Posters
[16] M. Hagemann and O. Schenk, Factorized Approximate Inverses for Symmetric Indefinite Systems, Book of Abstracts, Parallel Matrix Algorithms and Applications, PMAA'04, held in Marseille, October 2004.
[15] M. Hagemann and O. Schenk, Symmetric Weighted Matchings for Robust Preconditioning of General Symmetric Indefinite Matrices, Book of Abstracts, GAMM Workshop on Applied and Numerical Linear Algebra, held in Hagen, July 2004.
[14] M. Hagemann and O. Schenk, Symmetric Weighted Matchings for LDLT Preconditioning of Symmetric Indefinite Matrices, Book of Abstracts, Sparse Days '04, Cerfacs, held in Toulouse, June 2004.
2003
Refeered Conference Proceedings
[13] O. Schenk, M. Hagemann and S. R�llin, Recent advances in Sparse Linear Solver Technology for Semiconductor Device Simulation Matrices, In Proc. of the 2003 IEEE International Conference on Simulation of Semiconductor Processes and Devices, pp. 103-108, ISBN 0-07803-7826-1, held in Boston, Massachusetts, September 3-5, 2003, Boston, Cambridge, MA, USA.
[12] O. Schenk and M. Selig, Advancing Crash Forming Capabilities through Solver Technology, Proc. of the Second M.I.T. Conference on Computational Fluid and Solid Mechanics, 1 (2003), pp. 628-631, ISBN 0-08-044046-0, held at MIT, June 17-21, 2003, Boston, USA.
2002
Refeered Journal Articles
[11] O. Schenk and K. Gärtner, Two-Level Scheduling in PARDISO: Improved Scalability on Shared Memory Multiprocessing Systems, Parallel Computing, 28 (2002), pp. 187-197.
Refeered Conference Proceedings
[10] O. Schenk, K. G�rtner, Solving Unsymmetric Sparse Systems of Linear Equations with PARDISO, in P. M. A. Sloot, C. Jeng, K. Tan, J. Dongarra, A. G. Hoekstra (Eds.), Computational Science - ICCS 2002, International Conference, Amsterdam, The Netherlands, April 21-24, 2002, Proceedings, Springer 2002, ISBN 3-540-43593-X , Lecture Notes in Computer Science, 2330 (2002), pp. 355-363.
2001
Refeered Journal Articles
[9] O. Schenk, K. Gärtner, W. Fichtner, and A. Stricker, PARDISO: A High-Performance Serial and Parallel Sparse Linear Solver in Semiconductor Device Simulation, Journal of Future Generation Computers Systems, 18 (2001), pp. 69-78.
Refeered Conference Proceedings
[8] O. Schenk and K. G�rtner, Sparse Factorization with a Two-Level Scheduling in PARDISO, Proc. of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, CD-ROM, held in Portsmouth, Virginia, USA, March 12-14, 2001.
2000
PhD Thesis
[7] O. Schenk, Scalable Parallel Sparse LU Factorization Methods on Shared Memory Multiprocessors, PhD thesis, ETH Zurich, 2000, Series in Microelectronics, Volume 89, Hartung-Gorre, ISBN 3-89649-532-1.
Refeered Conference Proceedings
[6] O. Schenk and K. G�rtner, Scalable Parallel Sparse LU Factorization with a Dynamical Supernode Pivoting Approach in Semiconductor Device Simulation, Proc. of the 16th IMACS World Congress 2000, held in Lausanne, Switzerland, August 21-25, 2000.
Abstracts/Posters
[5] O. Schenk, Two-Level Dynamic Scheduling in PARDISO: Improved Scalability on Shared Memory Multiprocessing Systems, Book of Abstracts of the Parallel Matrix Algorithms and Applications PMAA 2000, held in Neuchatel, Switzerland, August 18-20, 2000.
1999
Refeered Journal Articles
[4] O. Schenk, K. Gärtner, and W. Fichtner, Scalable Parallel Sparse Factorization with Left-Right Looking Strategy on Shared Memory Multiprocessors, BIT Numerical Mathematics, 40 (1999), pp. 158-176.
[3] K. Gärtner, O. Schenk, and W. Fichtner, Parallel multigrid methods for the continuity equations in semiconductor device simulation, Speedup Journal, 12 (1999), pp. 67-72.
Refeered Conference Proceedings
[2] O. Schenk, W. Fichtner and K. G�rtner, Application of Parallel Sparse Direct Methods in Semiconductor Device and Process Simulation, in C. D. Polychronopoulos, K. Joe, A. Fukuda, S. Tomita (Eds.): High Performance Computing, Second International Symposium, ISHPC'99, Kyoto, Japan, May 26-28, 1999, Proceedings. Springer 1999, ISBN 3-540-65969-2, Lecture Notes in Computer Science, 1615 (1999), pp. 206-219.
1998
Abstracts/Posters
[1] O. Schenk, K. G�rtner, and W. Fichtner, Parallel Sparse LU Factorization in a Shared Memory Computing Environment, Poster, International FORTWIHR Conference, March 1998, Munich, Germany.